This is the repository for the BioImage Suite Web Project
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Updated
Mar 22, 2024 - JavaScript
This is the repository for the BioImage Suite Web Project
FSL-R Interface package
MATLAB toolbox to automatically detect, analyze and visualize spatiotemporal patterns in neural population activity, developed by Dr. Pulin Gong's group at University of Sydney
The QDECR package for vertex-wise analyses in R
Perform automatic skull-stripping for neuroimage analysis
Preprocessing toolbox for rat rs-fMRI data
Matlab toolbox to deconvolve BOLD-fMRI data. It produces the underlying spatiotemporal neural and hemodynamic activity
Peak width of Skeletonized Mean Diffusivity (PSMD)
Implementation of algorithm in 'Yikang Liu et al. (2020) Automatic Brain Extraction for Rodent MRI Images. Neuroinformatics. doi: 10.1007/s12021-020-09453-z''
Pypelines Utilizing a Modular Inventory
Analysis code for connecting time-series properties of BOLD dynamics to connectivity properties using human fMRI and DWI data from HCP
Threshold-free cluster enhancement toolbox for Matlab
A simple and intuitive wrapper for FSL tools.
Software for simulating MEG and EEG event-related responses. functional connectivity, and phase-amplitude coupling
Neuroimaging analysis in Python
Pre-clinical DSC-MRI perfusion map generator written in Python
Atlas methods and classes for neuroimaging
Analysis of the EEG LEMON and MEG CamCAN datasets
Python implementation of various Brainstorm functions, often written for GPU or jit speed-up.
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