Brainchop: In-browser 3D MRI rendering and segmentation

Use of state of the art Convolutional neural network architectures including 3D UNet, 3D VNet and 2D UNets for Brain Tumor Segmentation and using segmented image features for Survival Prediction of patients through deep neural networks.

This repo contain my assignment notebooks for the Coursera AI for Medicine Specialization course. The link to the course: https://www.coursera.org/specializations/ai-for-medicine

PyTorch 3D U-Net implementation for Multimodal Brain Tumor Segmentation (BraTS 2021)

Brain Segmentation on MRBrains18

Multimodal Brain Tumor Segmentation using BraTS 2018 Dataset.

AssemblyNet: 3D Whole Brain MRI segmentation pipeline

A pytorch implementation of 3D UNet for 3D MRI Segmentation.

Computational Anatomy Toolbox for SPM12

Deep CNN for Abdominal Adipose Tissue Segmentation on Dixon MRI

[AAAI'20] Segmenting Medical MRI via Recurrent Decoding Cell (Spotlight)

PNH segmentation pipelines based on nipype

I have completed this specialization from Coursera by deeplearning.ai. I have uploaded the solutions of the assignments in this repo.

SASHIMI segmentation is a Matlab App for semi-automatic interactive segmentation of multi-slice images.

Federated learning with homomorphic encryption enables multiple parties to securely co-train artificial intelligence models in pathology and radiology, reaching state-of-the-art performance with privacy guarantees.

Automatic segment and generate masks for any 3D medical images using SAM model without prompt

Segmentation of kidneys on MRI in Autosomal Dominant Polycystic Kidney

Automated subdivision of white matter hyperintensities

A brain MRI segmentation tool that provides accurate robust segmentation of problematic brain regions across the neurodegenerative spectrum. The methodology is generalisable to perform well with the typical variance in MRI acquisition parameters and other factors that influence image contrast.

Pytorch implementation of the DWP with application to MRI segmentation