🌶️ An ecosystem in Python for working with the Biological Expression Language (BEL)
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Updated
May 14, 2024 - Python
🌶️ An ecosystem in Python for working with the Biological Expression Language (BEL)
R client for the OmniPath web service
`ggbipart`, an R package for plotting bipartite networks
Simulating and analyzing dynamical network models
COVID-19 Knowledge Graph: a computable, multi-modal, cause-and-effect knowledge model of COVID-19 pathophysiology
Curation of Neurodegeneration in Biological Expression Language (CONIB)
A Python package for drug discovery by analyzing causal paths on multiscale networks
A machine learning tool to assign edges in protein-protein interaction networks with a function.
A Bio2BEL package for DrugBank (https://www.drugbank.ca)
Generate dynamic structural causal models from biological knowledge graphs encoded in the Biological Expression Language (BEL)
A Bio2BEL package for integrating pathway-related information from KEGG in BEL
Functional Associations using Variational Autoencoders
A web application for visualizing and exploring pathway knowledge in Biological Expression Language (BEL)
Modeling heme pathogenicity and pathway dysregulation in the context of hemolytic disorders
Structure Learning for Hierarchical Networks
Bio-ModelChecker: Using Bounded Constraint Satisfaction to Seamlessly Integrate Observed Behavior with Prior Knowledge of Biological Networks
Enhancing Boolean networks with continuous logical operators and edge tuning: smoothing simulations
A series of simulation codes used to emulate quantum-like networks in the simulation of emergent adaptive behavior, such as network synchronization, and relate the nature of the coupled harmonic oscillators with non-local behavior and chimera states in systems of quantum particles. Coding Used is based on mathematical modelling of transport in q…
📖 Generation and Applications of Knowledge Graphs in Systems and Networks Biology
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