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neighbour-joining

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amarinderthind / CGRphylo

CGR package for phylogeny. Pipeline compare multiple whole genome sequences using alignment free approach Chaos Game Representation (CGR). CRG core function creates the frequencies object for each sequence which can be used to calculate distances among sequences.

virus phylogenetic-trees phylogenetics bacteria maximum-likelihood phylogenomics phylogeny crg whole chaos-game chaos-game-representation sars-cov-2 recombinant phylogeny-plots cgrphylo neighbour-joining

Updated Feb 1, 2024
R

GiorgiaAuroraAdorni / neigh

Neighbour Joining algorithm for the creation of Phylogenetic Trees, implemented in C. Project for the Bioinformatics course @unimib17/18.

bioinformatics phylogenetic-trees phylogenetics neighbour-joining

Updated Apr 4, 2018
C

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