Bioinformatic analysis of gene expression microarray profiles and DGEs on R and R studio
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Updated
Apr 22, 2024 - Jupyter Notebook
Bioinformatic analysis of gene expression microarray profiles and DGEs on R and R studio
The bridge between the NCBI Gene Expression Omnibus and Bioconductor
My solutions for the project of "An Intro to Bioinformatics" - Sharif University of Technology (SUT) - Prof. Somayyeh Koohi and Prof. Ali Sharifi-Zarchi - Fall 2021(1400-1).
analyze_geo_microarrays.py : Differential expression analysis of published microarrays datasets from the NCBI Gene Expression Omnibus (GEO)
A list of publicly available Microarray Gene Expression datasets with proper attribution and associated toolkits.
A small utility to quickly tag studies and samples from the NCBI Gene Expression Omnibus (GEO) with a curses interface.
Scripts using GEOquery package to fetch expression matrices and phenotypic data associated with GSE datasets
Microarray Analysis Pipeline in Python
Subclassification of disease states based on the intersection of literature and expression
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