The bridge between the NCBI Gene Expression Omnibus and Bioconductor
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Updated
May 18, 2024 - R
The bridge between the NCBI Gene Expression Omnibus and Bioconductor
Microarray Analysis Pipeline in Python
analyze_geo_microarrays.py : Differential expression analysis of published microarrays datasets from the NCBI Gene Expression Omnibus (GEO)
Subclassification of disease states based on the intersection of literature and expression
Scripts using GEOquery package to fetch expression matrices and phenotypic data associated with GSE datasets
A list of publicly available Microarray Gene Expression datasets with proper attribution and associated toolkits.
A small utility to quickly tag studies and samples from the NCBI Gene Expression Omnibus (GEO) with a curses interface.
My solutions for the project of "An Intro to Bioinformatics" - Sharif University of Technology (SUT) - Prof. Somayyeh Koohi and Prof. Ali Sharifi-Zarchi - Fall 2021(1400-1).
Bioinformatic analysis of gene expression microarray profiles and DGEs on R and R studio
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