My solutions for the project of "An Intro to Bioinformatics" - Sharif University of Technology (SUT) - Prof. Somayyeh Koohi and Prof. Ali Sharifi-Zarchi - Fall 2021(1400-1).
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Updated
Jul 6, 2023 - R
My solutions for the project of "An Intro to Bioinformatics" - Sharif University of Technology (SUT) - Prof. Somayyeh Koohi and Prof. Ali Sharifi-Zarchi - Fall 2021(1400-1).
A list of publicly available Microarray Gene Expression datasets with proper attribution and associated toolkits.
Scripts using GEOquery package to fetch expression matrices and phenotypic data associated with GSE datasets
Bioinformatic analysis of gene expression microarray profiles and DGEs on R and R studio
A small utility to quickly tag studies and samples from the NCBI Gene Expression Omnibus (GEO) with a curses interface.
analyze_geo_microarrays.py : Differential expression analysis of published microarrays datasets from the NCBI Gene Expression Omnibus (GEO)
Subclassification of disease states based on the intersection of literature and expression
Microarray Analysis Pipeline in Python
The bridge between the NCBI Gene Expression Omnibus and Bioconductor
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