mutation-analysis
Here are 54 public repositories matching this topic...
A simple GUI that allows users to check whether mutations from a SARS-CoV-2 genome best fit a mutational distribution of genomes derived from global, chronic, or deer infections.
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May 30, 2024 - Python
Infection Playground - online tool to try Infection right in your browser.
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May 26, 2024 - PHP
things behind nectarmutation.org
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Nov 11, 2020 - Perl
Multi-class classifier for DNA genetic mutations.
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Dec 9, 2023 - Jupyter Notebook
Student plagiarism detection tool based on CCD algorithms
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May 29, 2024 - Ruby
BAMdelbee is a novel tool for discovering homozygous deletions in Whole-exome-sequencing (WES) and whole-genome-sequencing (WGS) data. WES or WGS samples generated by the same method produce BAM files with similar alignment coverage across the genome. BAMdelbee locates homozygous deletions by pinpointing regions covered in all samples but the on…
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May 14, 2022 - Python
Mutation Detection in Lung Cancer Cell Lines using CNNs
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Oct 3, 2019 - Python
An efficient mutation testing tool written in Kotlin for Java Maven projects
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May 10, 2021 - Kotlin
Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and non-clustered groups on a sample-dependent basis.
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Jan 12, 2024 - Python
Analyzing TCGA cohorts and multiomic data in R
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Dec 23, 2023
Another needleplot for mutation data, used by ActiveDriverDB
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Nov 1, 2020 - JavaScript
Generates a Dextool Mutate vs LCOV side by side presentation
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Apr 12, 2021 - HTML
Snakemake Pipeline for the Analyses of ChIP-seq data in Cancer samples
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Apr 16, 2024 - Python
Next-gen Sequencing analysis tools
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Feb 13, 2023 - C
Genomic surveillance for Dengue peruvian outbreaks
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Jul 14, 2023 - Shell
Projects that use mutation testing, based on mutation operators applied at the level of a statement within a method or a function. The mutated program needs to be strongly killed by the designed test cases. At least three different mutation operators should be used.
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Dec 20, 2018 - Java
MEMDS (Mutation Enrichment followed by upscaled Maximum Depth Sequencing) protocol output analysis pipeline
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Dec 20, 2021 - Python
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