MATLAB code for extracting, converting and anonymising files in CTF MEG proprietary format.

input ct data use U-net method systh mri

Code for analyzing medical images saved as .dicom files

Normative modelling code to go along with Bethlehem et al. 2018

Detection and removal of biases from brain MRI using adversarial architectures. This was my final project for CS 231n (Convolutional Neural Networks for Visual Recognition) at Stanford.

Docker container for FiberNavigator for Brainlife.io

Basic reconstruction scripts for data uploaded to mridata.org

A Matlab toolbox for examining the quality of structural (SNR) and functional (tSNR, SFNR) MRI

Fully supervised, healthy/malignant prostate detection in multi-parametric MRI (T2W, DWI, ADC), using a modified 2D RetinaNet model for medical object detection, built upon a shallow SEResNet backbone.

Deep-learning (U-NET) CNN model for fully automatic glioma segmentation in 3D volume of MRI data, Survival prediction using different algorithms

We developed a guide for researchers in the Netherlands who want to share brain MRI data to help them get started.

Code to run and analyze fMRI study of somatosensory detection task

Graduate k-space masking for MRI image denoising and blurring (on the example of Agilent FID data). (Python 3)

k-space weighting and masking for denoising of MRI image without blurring or losing contrast, as well as for brightening of the objects in the image with simultaneous noise reduction (on the example of Agilent FID data). (Python 3)

k-space based details/edges detection in MRI images with optional k-space based denoising and detail control (on the example of Agilent FID data). (Python 3)

Tool for calculating swelling tablet eroding front's diffusion rate D and the rate of the swelling k from time series of either T2-maps or MRI images in FDF or Text Image format. (Python 3)

Forked to 'github.com/uwmri/QVT'

⚕️ An educational tool to visualise k-space and aid the understanding of MRI image generation