⚕️ An educational tool to visualise k-space and aid the understanding of MRI image generation

Code for analyzing medical images saved as .dicom files

input ct data use U-net method systh mri

Basic reconstruction scripts for data uploaded to mridata.org

A Matlab toolbox for examining the quality of structural (SNR) and functional (tSNR, SFNR) MRI

Deep-learning (U-NET) CNN model for fully automatic glioma segmentation in 3D volume of MRI data, Survival prediction using different algorithms

"Octopus Realtime Encephalography Lab" is the (hard) real-time networked EEG-lab framework I have developed during my PhD Thesis at Brain Research Lab of Hacettepe University Faculty of Medicine Biophysics Lab. It is meant to be a holistic golden-standard solution for all tasks of cortical source localization/networking, brain-computer interface…

Flexible bidsificator for multimodal datasets

A CNN based algorithm with 91% accuracy for brain tumor detection.

Fully supervised, healthy/malignant prostate detection in multi-parametric MRI (T2W, DWI, ADC), using a modified 2D RetinaNet model for medical object detection, built upon a shallow SEResNet backbone.

Code to run and analyze fMRI study of somatosensory detection task

Forked to 'github.com/uwmri/QVT'

Detection and removal of biases from brain MRI using adversarial architectures. This was my final project for CS 231n (Convolutional Neural Networks for Visual Recognition) at Stanford.

We developed a guide for researchers in the Netherlands who want to share brain MRI data to help them get started.

Normative modelling code to go along with Bethlehem et al. 2018

Extracting MRI sequence header data (Magnetic field, Echo Time, Frequency, etc.) from JSON files (.json)

k-space weighting and masking for denoising of MRI image without blurring or losing contrast, as well as for brightening of the objects in the image with simultaneous noise reduction (on the example of Agilent FID data). (Python 3)

Simulating T1- and T2-weighted MRI images with arbitrary values of TI or TE, respectively. (Python 3)