Data & Code Supplement for "Environmental DNA as a management tool for tracking artificial waterhole use in savanna ecosystems"
-
Updated
Aug 9, 2022 - R
Data & Code Supplement for "Environmental DNA as a management tool for tracking artificial waterhole use in savanna ecosystems"
Supplementary files for the paper "Environmental DNA metabarcoding of Danish soil samples reveals new insight into the hidden diversity of eutardigrades in Denmark"
Shiny app that creates files used by the OBITools to demultiplex metabarcoding sequences
Master 1 project of 4 students at Institut Agro Montpellier in collaboration with a research lab for population biology and management (CBGP) in Montpellier
Datasets and code used to create figures in "Hajibabaei et al., 2019. Watered-down biodiversity? A comparison of metabarcoding results from DNA extracted from matched water and bulk tissue biomonitoring samples. PLoS ONE 14(12): e0225409."
Metabarcoding analysis pipeline, using DADA2 and qiime2
A primary goal of this research was to characterize vent plume biogeography across a spatial gradient. This study was done in collaboration with OceanX during the 2021 Young Explorers Program.
Analysis of the effect of forestry cutting methods on ectomycorrhizal communities in boreal pine and spruce forest, using metabarcoding methods
Dr Marion Couëdel's personal website
The purpose of this repository is the metagenomic analysis of FastQ files
hamPCR + Douglas-fir + needle fungi
COI sequences files used to test the COI Classifier Web Portal
Contains scripts for biodiversity assessments of European lakes
A R script for the study of the prokaryotic community of the sponge Dactylospongia metachromia
This repository contains the scripts used to process Illumina MiSeq 18S, ITS2, and CO1 metabarcodes for Jesse Hoage's Master's thesis (2018). The ammended CO1 reference set is also included here (CO1 Classifier v2.1).
Add a description, image, and links to the metabarcoding topic page so that developers can more easily learn about it.
To associate your repository with the metabarcoding topic, visit your repo's landing page and select "manage topics."