Java API for the extraction and management of MIAPE documents from standard proteomics data files
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Updated
Aug 23, 2023 - Java
Java API for the extraction and management of MIAPE documents from standard proteomics data files
PHP Mass Spectrometry utility classes
A software for importing spectral data from Thermo RAW files to binStack format usable by QuiXoT.
Analysis of AP-MS data
Scripts used for the paper Inglese, P., Correia, G., Pruski, P., Glen, R. C., & Takats, Z. (2019). Colocalization features for classification of tumors using desorption electrospray ionization mass spectrometry imaging. Analytical chemistry.
A Directed Acyclic Word Graph built for searching mass spectrometry data agains a protein database
The TLC-MS_manager is an open-source software to control the autoTLC-LC-MS interface.
Script for quantification of glucosaminoglycans (GAGs) based on Proteome Discoverer output, with web-interface powered by Bokeh
Repository dedicated to the Signal Processing of Quadrupole Mass Spectrometry:
Strategies for increasing the depth and throughput of protein analysis by plexDIA. The code is distributed by an MIT license.
Python and R scripts with examples demonstrating the conversion of IM-MS raw data to CCS/z space.
MSnbase v2 paper
Spectral binning as an approach to post-acquisition processing of high resolution FIE-HRMS metabolome fingerprinting data
The dia-PASEF Visualization Tool App is a Shiny App that helps to quickly inspect the results of dia-PASEF. This app is a user-friendly tool designed to streamline the process of exploring and visualizing dia-PASEF results. It uses the reports from common software tools, DIA-NN, Spectronaut and tims DIA-NN.
Protein Cleaver is a versatile tool for protein analysis and digestion.
Code used for processing proteomics data associated with the publication by Yan et al., submitted to Nature Communications in 2024
C# classes that can be used to interface with the ProteoWizard libraries
🍎 Web-based Application for Exploratory and Statistical Analysis of Mass Spectrometry Spectral Counts Data
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