Library & executable for converting Themisto pseudoalignments to kallisto pseudoalignments.
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Updated
Sep 4, 2023 - C++
Library & executable for converting Themisto pseudoalignments to kallisto pseudoalignments.
Differential gene expression analysis of Nannochloropsis oceanica growth with or without beneficial/harmful bacteria.
kallisto indexing and tag extraction
GenePattern Notebook running Kallisto
A script to analyze with DESeq2 data from Kallisto. You maybe are interested only in DESeq2 part and its analisis and representation :)
Pipeline for analysing differential isoforms in fetal and adult cardiac fibroblasts
Bulk RNA-seq analytical pipeline, including using Snakemake to run main steps such as Kallisto read mapping, QC, Principal Component Analysis (PCA), and other downstream analysis.
kallisto task for RNA-seq workflow
Assembly of RNA transcriptome, differential expression analysis, identification of lncRNA candidates based on genomic context and protein coding potential.
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