Single cell Nanopore sequencing data for Genotype and Phenotype
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Updated
May 16, 2024 - Python
Single cell Nanopore sequencing data for Genotype and Phenotype
Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:
A package dedicated to the simulation of sequencing read data corresponding to randomly generated genes with predifined splice-models for the evaluation of transcriptome assembly tools
interactive visualization of single-cell transcriptomes
Get the latest gene-transcript identifiers using Ensembl, RefSeq, MANE and LRGs models.
Discover differential transcript usage from polyA-captured single cell RNA-seq data
A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
Perform molecular dynamics experiments (MD) with NAMD on colab
Method to identify temporal and sex-specific alternative splicing from multi-omic data, specifically RNA-seq + (CUT&RUN or ChIP-seq).
EXIS is an interactive R shiny application for isoform-specific expression analysis.
Automated Isoform Discovery Detector (AIDD)
A python module to read and plot Galaxy RNA-seq data
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