[Under active development] - A library of published compartmental epidemic models, and classes to represent demographic structure, non-pharmaceutical interventions, and vaccination regimes, to compose epidemic scenarios.

Course on nowcasting and forecasting of infectious disease dynamcis

Estimating reproduction number and dispersion parameter from sequence cluster size distribution.

Code used in the analysis of the effective reproduction number and the dispersion parameter of SARS-CoV-2.

Code used to produce results and figures for BA Pathology project on the prospects of a BCG vaccine program in Great Britain. Developed by Joanna Vieira O'Neill, University of Cambridge.