MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
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Updated
May 16, 2024 - Kotlin
MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
🐶 hlabud: HLA genotype analysis in R
🗂️ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!
📚 Tools and databases for analyzing HLA and VDJ genes.
About me (Soumya Banerjee)
Large scale, in silico interaction analyses of SARS-CoV-2 nucleocapsid protein variants against human cytokines.
A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces
Snakemake workflow to profile MHC-I neoepitopes with bulk tumor RNAseq data
Comparison of gene usage in immune repertoires under different biological conditions
Clustering of immune receptor repertoires
An HLA star-calling tool for PacBio HiFi data types
🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires
A Python library for reading and writing Flow Cytometry Standard (FCS) files
Standardise TR/MH data
A RepSeq processing swiss-knife
Post-analysis of immune repertoire sequencing data
Exploring what valency does to IL-2.
Sequence-based prediction of peptide-TCR interactions using paired chain data
PICAFlow: a complete R workflow dedicated to flow/mass cytometry data, from data pre-processing to deep and comprehensive analysis.
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