Microscope control and image acquisition integrated with ImageJ.
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May 11, 2024 - Java
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ImageJ
ImageJ is an open source Java image processing program inspired by NIH Image.
It runs on any computer with a Java 1.8 or later virtual machine.
Downloadable distributions are available for Windows, Mac OS X and Linux.
ImageJ has a strong, established user base, with thousands of plugins and macros for performing a wide variety of tasks.
Fiji is a "batteries-included" distribution of ImageJ, bundling many plugins which facilitate scientific image analysis.
Here are 306 public repositories matching this topic...
QuPath - Bioimage analysis & digital pathology
groovy
opencv
machine-learning
imagej
javafx
image-processing
histology
cell-segmentation
bioimage-informatics
digital-pathology
pathology
whole-slide-imaging
cell-analysis
computational-pathology
bioimage-analysis
tissue-microarray-analysis
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May 10, 2024 - Java
Read and write TIFF files
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May 10, 2024 - Python
Macros for ImageJ/FIJI
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May 9, 2024 - ImageJ Macro
Simple tool for Calcium-imaging data preprocessing, based on timing-metadata from Olympus Fluoview sowtware
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May 8, 2024 - Python
A .NET microscopy imaging application based on Bio library. Supports various microscopes by using imported libraries & GUI automation. Supports XInput game controllers to move stage, take images, run ImageJ macros on images or Bio C# scripts.
plugin
imagej
scripting
microscopy
imaging
histology
microscope
micro-manager
whole-slide-imaging
microscope-stage-controller
image-stacks
image-acquisition
imagej-macro
microscope-control
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May 8, 2024 - C#
sciview is a tool for visualization and interaction with ND image and mesh data
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May 8, 2024 - Java
"ça y est j'ai une idée! non deux, trois, oh lala, oh lala j'ai plein d'idées..."
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May 7, 2024 - ImageJ Macro
A cross platform version of Bio library & program. Bio is a library & program for annotating, & editing various microscopy imaging formats using Bioformats supported images. including whole slide, pyramidal & series.
gtk
cross-platform
imagej
geojson
biology
plugins
bio-formats
omero
roi
microscopy
openslide
image-stacks
qupath
whole-slide-image
imagej-roi
imagej-tiff
segment-anything
segment-anything-model
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May 8, 2024 - C#
The ImageJ framework for quantification of neuronal anatomy
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May 7, 2024 - Java
A collection of ImageJ2 plugins for use with KNIME
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May 2, 2024 - Java
A GUI-less version of Bio .NET library for editing & annotating various microscopy image formats. Supports all bioformats supported images. Integrates with ImageJ, running ImageJ filters & macro functions.
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May 4, 2024 - C#
Repository for MDPI Paper in 2021
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Apr 30, 2024
A curated list of software, tools, pipelines, plugins etc. for image analysis related to biological questions.
awesome
imagej
biology
image-processing
cellprofiler
awesome-list
segmentation
image-analysis
microscopy
imaging
bioimage-analysis
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Apr 30, 2024
My awkward scripts for making image processing easier.
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Apr 28, 2024 - ImageJ Macro
Bio Library in .NET8. Bio is a library & program for annotating, & editing various microscopy imaging formats using Bioformats supported images. including whole slide, pyramidal & series.
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Apr 29, 2024 - C#
A Spark-interface for the io.scif and other libraries to take advantage of the ImageJ2 ecosystem.
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Apr 26, 2024 - Scala
Plugins for bone image analysis
imagej
travis-ci
image-processing
scientific-computing
java-8
image-analysis
imagej-plugins
maven-multimodule
fiji-plugin
skeletal-biology
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Apr 26, 2024 - Java
Fiji/ImageJ macros to quickly add a scale bar to an (electron microscopy) image.
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Apr 24, 2024 - ImageJ Macro
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