A Girder plugin for pathology image annotations and analysis.
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Updated
May 23, 2024 - JavaScript
A Girder plugin for pathology image annotations and analysis.
slideToolkit: a free toolset for analyzing wholeslide high-resolution digital histological images.
QuPath - Bioimage analysis & digital pathology
Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology - CVPR 2024
Deep learning library for digital pathology, with both Tensorflow and PyTorch support.
The official deployment of the Digital Slide Archive and HistomicsTK.
A Python toolkit for pathology image analysis algorithms.
A .NET microscopy imaging application based on Bio library. Supports various microscopes by using imported libraries & GUI automation. Supports XInput game controllers to move stage, take images, run ImageJ macros on images or Bio C# scripts.
Axon/Myelin segmentation using Deep Learning
R-based Utilities for Hiplex
This repo for the paper titled "SC-MIL: Sparsely Coded Multiple Instance Learning for Whole Slide Image Classification"
MyoQuant🔬: a tool to automatically quantify pathological features in muscle fiber histology images. Demo version deployed at: https://lbgi.fr/MyoQuant
A software package for 3D reconstruction of 2D brain sections
Deep-learning based classification pipeline for subtyping lung tumors from histology. Study design and codebase to analyze the impact of nucleus segmentation on subtyping.
My project for the national ai competition in Germany 2023
Sitio web de la Cátedra de Histología y Anatomía de la FIUNER
A Nextflow wrapper for HistoQC
Approach that won 3rd place in the OCELOT 2023 Challenge. Multi-organ H&E-based deep learning model for cell detection, applicable for tumor cellularity/ purity/ content estimation.
Train and apply a RandomForestClassifier on large images
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