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gotoh

Here are 3 public repositories matching this topic...

odoluca / Fast-NW-and-SW-Pairwise-alignment-using-numba-JIT

This project includes Needleman-Wunsch and Smith-Waterman algorithms and their afine gap variations (Gotoh) written to work with Cython, PyPy and Numba. Numba JIT shows greater performance. For Best performance use gotoh_jit.py to get only the best score and use gotoh_jit_traceback to get the best alignment

python cython smith-waterman needleman-wunsch python-3-6 alignment protein-sequences numba dna-sequences pairwise pairwise-alignment pypy3 gotoh

Updated Sep 22, 2021
Python

RJPenic / OSALG

Optimal Sequence Aligner allowing for Long Gaps

bioinformatics simd sequence-alignment gotoh gotoh-algorithm

Updated May 19, 2020
C++

github4touchdouble / bench-sequence-alignments

Benchmark the performance of sequence alignment workflows

smith-waterman needleman-wunsch sequence-alignment protein-alignment gotoh

Updated Apr 22, 2024
Ruby

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