Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]
-
Updated
Mar 6, 2024 - C++
Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]
A Go library for working with Graphical Fragment Assembly format
Linear-time, low-memory construction of variation graphs
Line-by-line converter from GFA to RDF (turtle)
Web-app that handles submitting scan-requests to the Annex.
A repository for scoring gliding competitions, that aims to be efficient and accurate.
A C++ library and utilities for manipulating the Graphical Fragment Assembly format.
A Julia package for handle genome graph in the GFA format.
Genome parser and visualisation
Graphical Fragment Assembly (GFA) Format Specification
#Golang package and cli tool for converting to #ZPL (from PNG, JPEG and GIF) for @ZebraTechnology-printers
Gfapy: a flexible and extensible software library for handling sequence graphs in Python
GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
SPARQL endpoint to represent pangenomic data
RDF and SPARQL ideas to build on top of [odgi](https://github.com/pangenome/odgi)
Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
Add a description, image, and links to the gfa topic page so that developers can more easily learn about it.
To associate your repository with the gfa topic, visit your repo's landing page and select "manage topics."