oxiqle (OXIgraph-based pangenomic sparQL Endpoint) is a fork of oxigraph that includes rs-handlegraph. The purpose is to make pangenomic GFA-files accessible with SPARQL queries.
Oxigraph is a graph database implementing the SPARQL standard.
When cloning this codebase, don't forget to clone the submodules using
git clone --recursive https://github.com/oxigraph/oxigraph.git to clone the repository including submodules or
git submodule update --init to add the submodules to the already cloned repository.
Build oxi-handlegraph with:
cargo build --release
Run server:
./target/release/oxigraph_server serve -l <path_to_gfa>
Run query from CLI:
./target/release/oxigraph_server query -l <path_to_gfa> --results-file out.txt --query-file <path_to_sparql_query>
Feel free to ask heringerp for help. Bug reports are also very welcome.
This project is licensed under either of
- Apache License, Version 2.0, (LICENSE-APACHE or http://www.apache.org/licenses/LICENSE-2.0)
- MIT license (LICENSE-MIT or http://opensource.org/licenses/MIT)
at your option.
Unless you explicitly state otherwise, any contribution intentionally submitted for inclusion in Oxigraph by you, as defined in the Apache-2.0 license, shall be dual licensed as above, without any additional terms or conditions.