Cython bindings and Python interface to Opal, a SIMD-accelerated database search aligner.
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Updated
May 8, 2024 - Python
Cython bindings and Python interface to Opal, a SIMD-accelerated database search aligner.
GCModeller: genomics CAD(Computer Assistant Design) Modeller system in .NET language
Cython bindings and Python interface to Tantan, a fast method for identifying repeats in DNA and protein sequences.
GEne Cluster prediction with COnditional random fields.
Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.
Mycobacterial pipeline
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
CLI tool for flexible and fast adaptive sampling on ONT sequencers
NGLess: NGS with less work
An API, a query engine, and a database schema for genomic sequences; currently with a focus on SARS-CoV-2
Data intensive science for everyone.
Application of pan-genome for population
Prototype for Human Genomics Data Sharing Field Guide Website
Bystro genetic analysis (annotation, filtering, statistics)
The nuclear package for various bioinformatics projects like GSEA.jl 🧬
Inferring Nucleosome Position Shifting with scATAC-seq Data
This repository contains a Python-based genome assembler designed to perform k-mer spectrum-based error correction and generate SAM files for visualizing genome mappings. It supports genomic data analysis with a focus on identifying mutations relevant to antibiotic resistance.
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