iPfal17 genome-scale metabolic reconstruction; lipid metabolism curation
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Updated
Jun 22, 2018 - Python
iPfal17 genome-scale metabolic reconstruction; lipid metabolism curation
58 GEMs for gut bacterial species from microbiota of healthy and malnourished children.
COM-dFBA is a MATLAB based COMmunity Dynamic Flux Balance Analysis framework developed by the Chalmers iGEM 2018 team. For this work, we were nominated for best modeling at the Giant Jamboree.
EMBL GEMs: A collection of GEnome-scale Models for bacterial species
Genome-scale metabolic model of Methylococcus capsulatus.
Supplementary data for co-occurrence manuscript
Collection of scripts for enhancing humanGEM based models with kinetic and proteomics constraints and specialized simulation utilities.
The consensus GEM for Kluyveromyces marxianus
Genome-scale metabolic model of Cordyceps militaris
Genome-scale metabolic model of Rhodotorula toruloides
SMETANA: a tool to analyse interactions in microbial communities
Supplementary code and results from doi:10.1101/2020.02.20.957662
H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)
Collection of scripts to collect data from databases such as BRENDA, BiGG, and the chemical translation service, and update a model of CHO-K1 growth.
Proteome-constrained model of Lactococcus lactis
Integration of cofactors with proteome-constrained model of Saccharomyces cerevisiae
Trim, extract, and convert GEMs
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