Learn metabolic modelling and using ScrumPy for modelling.
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Updated
Mar 15, 2022 - HTML
Learn metabolic modelling and using ScrumPy for modelling.
iPfal17 genome-scale metabolic reconstruction; lipid metabolism curation
A metabolic modeling workflow for communities of organisms in an nasal medium.
GEM for the microalga Microchloropsis gaditana.
Common biochemical and topological attributes of metabolic genes recurrently dysregulated in tumors.
Proteome-constrained model of Lactococcus lactis
58 GEMs for gut bacterial species from microbiota of healthy and malnourished children.
Genome-scale metabolic model of Rhodotorula toruloides
Supplementary code and results from doi:10.1101/2020.02.20.957662
Integration of cofactors with proteome-constrained model of Saccharomyces cerevisiae
Genome-scale metabolic model of Cordyceps militaris
The consensus GEM for Kluyveromyces marxianus
Collection of scripts for enhancing humanGEM based models with kinetic and proteomics constraints and specialized simulation utilities.
Methanoperedens nitroreducens genome-scale metabolic model.
CBMPy Metadraft: a flexible and extensible genome-scale model reconstruction tool
Trim, extract, and convert GEMs
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