Learn metabolic modelling and using ScrumPy for modelling.
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Updated
Mar 15, 2022 - HTML
Learn metabolic modelling and using ScrumPy for modelling.
Collection of scripts to collect data from databases such as BRENDA, BiGG, and the chemical translation service, and update a model of CHO-K1 growth.
Supplementary code and results from doi:10.1101/2020.02.20.957662
iPfal17 genome-scale metabolic reconstruction; lipid metabolism curation
A metabolic modeling workflow for communities of organisms in an nasal medium.
Integration of cofactors with proteome-constrained model of Saccharomyces cerevisiae
Genome scale metabolic model for Ogataea polymorpha NCYC495.
Collection of scripts for enhancing humanGEM based models with kinetic and proteomics constraints and specialized simulation utilities.
COM-dFBA is a MATLAB based COMmunity Dynamic Flux Balance Analysis framework developed by the Chalmers iGEM 2018 team. For this work, we were nominated for best modeling at the Giant Jamboree.
mergem is a python package and command-line tool for merging, comparing, and translating genome-scale metabolic models
Methanoperedens nitroreducens genome-scale metabolic model.
GEM for the microalga Microchloropsis gaditana.
Proteome-constrained model of Lactococcus lactis
TRIMER is a package for building integrated metabolic–regulatory models base on Bayesian network. TRIMER can be used for knockout phenotype prediction and knock flux prediction.
58 GEMs for gut bacterial species from microbiota of healthy and malnourished children.
Genome-scale metabolic model of Cordyceps militaris
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