Predicting Alzheimer’s disease risk factors from the variant fingerprints of non-AD genes
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Updated
May 12, 2020 - Jupyter Notebook
Predicting Alzheimer’s disease risk factors from the variant fingerprints of non-AD genes
A toolkit for identifying gene homologs in closely related species.
A new annotation file format based on JSON, containing all information stored in the GenBank format but with advantageoius parsing and information structure properties.
Stone Lab @ CSUEB Collaboration Projects focused on Plant Bioinformatics
Linux tool for relative mutation rate of different genes across viral strains.
Fastest GTF/GFF-to-BED converter chilling around
Python tool for relative mutation rate of different genes across viral strains.
A bioinformatics software system designed for comparing gene annotations between different releases for a selected species. It includes Python classes for data processing, information extraction, a MySQL relational database, and web-based interfaces for dynamic data querying.
Analysis workflow to generate fungal assemblies, generate gene structural and functional annotations
Nextflow workflow to generate gene track files for HiGlass
A high-performance BED-to-GTF converter written in Rust
EMBLish aims to provide a tool for converting gene prediction files such as Maker output file and gene annotation files such as Pannzer2 output file into the EMBL format
A NextFlow pipeline for the annotation of gene homologs using SABAT.
Optimising the Definitions of Expressed Regions
scripts associated with yam genome assembly
Supplementary code for the paper: Incomplete annotation has a disproportionate impact on our understanding of Mendelian and complex neurogenetic disorders
The related code of the master thesis, "Using deep learning to predict gene structures of the coding genes in DNA sequences of Arabidopsis thaliana"
Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes
GTF/GFF per gene non-overlapping exon length calculator
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