Given HuBMAP Dataset JSON, creates a Vitessce configuration
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Updated
May 21, 2024 - Python
Given HuBMAP Dataset JSON, creates a Vitessce configuration
HuBMAP Data Portal front end
Documentation website of Gosling.js
Python API and Jupyter widget for Vitessce
Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.
Vitessce is a visual integration tool for exploration of spatial single-cell experiments.
Grammar of Scalable Linked Interactive Nucleotide Graphics
Docker containers to pre-process data for visualization in the portal
A declarative library for Python designed to create interactive multi-scale visualizations of genomics and epigenomics data.
Javascript implementation of Zarr
A minimal Zarr image viewer based on Viv.
Fast, flexible and extensible genome browser.
An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..
Interactive visual analytic tool for exploring epigenomics data w/ associated metadata, powered by HiGlass and Gosling
R API and htmlwidget for Vitessce
Repository for covidclinical.net website.
A utility script to manage local docker instances of HiGlass
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