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40 Open 452 Closed
40 Open 452 Closed
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Issues list

Update sample-section, sample-block, sample-section to revise naming of "preparation condition" and "storage condition" enhanced validation New validation rule request
#1180 opened Apr 5, 2023 by bhonick
@bhonick
Upgrade the frictionless package
#1172 opened Feb 9, 2023 by yuanzhou
Add design_description to sequencing assay metdata schemas to meet dbgap requirements enhanced validation New validation rule request
#1167 opened Jan 6, 2023 by bhonick
@icaoberg @bhonick @j-uranic
Add examples to geomx directory structure schema directory schema
#1157 opened Dec 13, 2022 by icaoberg
@icaoberg @SFD5311
DEPRECATED SEE ASANA -- bulkATACseq Validation Broken
#1153 opened Nov 16, 2022 by bhonick
@bhonick
1
Create a codex-v1 directory schema which supports directories with and without dataset.json directory schema
#1152 opened Nov 16, 2022 by jswelling
@icaoberg
Change codex-v1 metadata schema to eliminate CODEX2 type string enhanced validation New validation rule request
#1151 opened Nov 15, 2022 by jswelling
@bhonick
Update Sample v0 description for sample_id
#1149 opened Nov 10, 2022 by bhonick
@sunset666 @bhonick
Validate_upload should require contributors and antibodies to be actual files
#1143 opened Oct 13, 2022 by jswelling
@bhonick
validate_upload should not allow two lines to share the same data_path
#1142 opened Oct 11, 2022 by jswelling
@bhonick
Change directory schema validation so that zero-length files don't satisfy schema requirements new feature New feature that goes beyond a rules tweak
#1140 opened Sep 30, 2022 by jswelling
@bhonick
Change stained microscopy directory schema to be more generic and not specific to PAS microscopy, use OME-TIFF as raw data format directory schema
#1138 opened Sep 20, 2022 by NHPatterson
@icaoberg
2
Change LCMS metadata schema: allow a comma separate list of values for tissue id field enhanced validation New validation rule request
#1132 opened Aug 16, 2022 by pdblood
@bhonick
Explain why there are so many RNA seq assay names
#1119 opened Jul 8, 2022 by mccalluc
@tsliaw
Update README when PSC documentation is available
#1116 opened Jul 8, 2022 by mccalluc
CODEX2 -> CODEX
#1107 opened Jun 6, 2022 by mccalluc
Typo? bug Something isn't working directory schema
#1105 opened May 26, 2022 by icaoberg
@mruffalo @pdblood
Check date/time types
#1100 opened May 24, 2022 by mccalluc
DP is ready to locally validate and submit a CE-MS directory schema question:Schemas Metadata or dir structure schemas
#1060 opened Mar 22, 2022 by icaoberg
@jswelling
2
Urgent installation not working
#1056 opened Mar 7, 2022 by pxh251
@icaoberg
9
Remove number_of_antibodies since we'll have antibodies.tsv? enhanced validation New validation rule request
#1048 opened Feb 11, 2022 by mccalluc
@cebriggs7135
Update flowchart to reflect reality
#1043 opened Feb 4, 2022 by mccalluc
@khanshawPSC
1
Describe RNA-seq v2 / v3
#1042 opened Feb 4, 2022 by mccalluc
@cebriggs7135
Revise file descriptions directory schema
#991 opened Nov 12, 2021 by icaoberg
@icaoberg
Confirm provenance structure during local validation
#951 opened Sep 17, 2021 by mccalluc
ProTip! Adding no:label will show everything without a label.