Software platform for clinical neuroimaging studies
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Updated
May 30, 2024 - Python
Software platform for clinical neuroimaging studies
This repository contains the files that generate Andy's Brain Book on ReadTheDocs.
Preprocessing pipeline on Brain MR Images through FSL and ANTs, including registration, skull-stripping, bias field correction, enhancement and segmentation.
ICA-AROMA Software Package: a data-driven method to identify and remove head motion-related artefacts from functional MRI data.
Small Animal Magnetic Resonance Imaging via Python.
Utility MATLAB functions and wrappers for fMRI data analysis, mostly based in SPM12
Introduction to dMRI
PNH segmentation pipelines based on nipype
FSL-R Interface package
Code for performing static, dynamic and real-time shimming using external MRI shim coils
The project is used to do preprocessing on brain MR images by using Nipype.
A Matlab-based software package for preprocessing the resting-state fMRI data
Probabilistic Threshold-Free Cluster Enhancement of Neuroimages
Cloud Based Interactive Visualization of Tractography Brain Connectome (CIVILITY) is an interactive visualization tool of brain connectome in the web.
General utility scripts, documentation, and analysis tutorials for Smith Lab.
A re-implementation of FSL's Brain Extraction Tool in Python
ElikoPy is Python library aiming at easing the processing of diffusion imaging for microstructural analysis.
Preprocessing Pipelines for EEG (MNE-python), fMRI (nipype), MEG (MNE-python/autoreject) data
A modified FSL version for use with Slurm
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