The basic structural and diffusion MRI registration with pre-processing pipeline in Python.
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Updated
Jun 9, 2022 - Python
The basic structural and diffusion MRI registration with pre-processing pipeline in Python.
Preprocessing fMRI scans, localizing the brain area that processes faces.
A volumetric version of the Mindboggle 101 atlas conveniently imported in FSL. This repo was used in Bedini, M., Olivetti, E., Avesani, P., & Baldauf, D. (2023). Accurate localization and coactivation profiles of the frontal eye field and inferior frontal junction: an ALE and MACM fMRI meta-analysis. Brain Structure and Function, 1-21.
Python library for setting up FEAT analyses (FSL)
Code snippets for preprocessing DTI/MRI neuroimaging data
Small plugins for some popular softwares to make neuroimaging analysis workflow easy
Nipype workflow to generate fieldmaps from EPI acquisitions with differing phase-encoding directions
Normalising T1 weighted brain scans and lesions.
An automatic translation system from English text to Filipino Sign Language (FSL) using the E-Sign Approach
Preprocess head CT scans using python!
Reproduce BRATS preprocessing for a given patient (needed: 4 modalities T1, T2, T1c and FLAIR, optional: segmentation).
A package to import FreeSurfer/SPM/FLS ROIs to BrainVoyager as VOIs/POIs.
This is an experimental Docker image containing MIRTK, DrawEM, and FSL.
A simple script to deface (with use of fsl_deface) multiple T1/T2-weighetned files prepared according to the BIDS standard.
Icicle tree to visualize the variance explained by each IC component, as output from MELODIC.
pARI: permutation-based All-Resolutions Inference
Image analysis pipelines of qunatitative MRI (qMRI), including diffusion MRI (dMRI), in patients with adrenoleukodystrophy (ALD)
An extensible fMRI Preprocessing Pipeline in nipype based on a 2015 Jonathan Power Pipeline
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