Tools for computational pathology
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Updated
Apr 10, 2024 - Python
Tools for computational pathology
Precision current source, with optional optical feedback, for driving LEDs and laser diodes
Official Python implementation of the 'Sparse deconvolution'-v0.3.0
Official MATLAB implementation of the "Sparse deconvolution" -v1.0.3
PyFRAP: A Python based FRAP analysis tool box
Single-cell fluorescence microscopy data analysis
GLabViz - Interactive Analysis and Visualization Application for Scientific Data written in Python using Qt and pyqtrgaph
Self-Supervised Vision Transformers for multiplexed imaging datasets
ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.
An open-source Python library for the analysis of fluorescence lifetime and hyperspectral images using the phasor approach
Read Becker & Hickl SDT files
A convex 3D deconvolution algorithm for low photon count fluorescence imaging
DDRS4PALS - A software for the acquisition and simulation of positron lifetime spectra (PALS) using the DRS4 evaluation board.
Point Spread Function calculations for fluorescence microscopy
Fluorescent analysis of individualized C. elegans
Detection of straight line segments (rods) in noisy images
An ImageJ plugin to quantify ciliary shape, length, and fluorescence.
A MATLAB suite implementing computer vision pipeline to extract information from the noisy TIRF microscopy data (image stack)
DLTPulseGenerator - A library for the simulation of lifetime spectra based on realistically modelled detector-output pulses
Object Oriented Segmentation of Cell Nuclei in Fluorescence Microscopy Images
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