Tools for Imaging Flow Cytometry
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Updated
May 24, 2024 - R
Tools for Imaging Flow Cytometry
CyFlowRec is software for collecting FCS (Flow Cytometry Standard) files received via the serial port (RS232 serial interface) from a Partec flow cytometer sent via the TRANSFER function.
Framework for image and flow cytometry analysis
Popcycle is an R package that offers reproducible analytical tools to analyze flow cytometry data collected by SeaFlow
A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces
Image Processing tools for Imaging Flow Cytometry
CITEViz: Replicating the Interactive Flow Cytometry Workflow in CITE-Seq
A Python library for reading and writing Flow Cytometry Standard (FCS) files
FlowUtils is a Python package containing various utility functions related to flow cytometry analysis, primarily focused on compensation and transformation tasks commonly used within the flow community.
A computational toolkit in R for the integration, exploration, and analysis of high-dimensional single-cell cytometry and imaging data.
Python package with library and CLI tool for analyzing SeaFlow data
In-browser utility for validating FCS file specification compliance
Flow/Mass Cytometry Gating via Spatial Kernel Density Estimation
Official implementation of GateNet
Calibration of SeaFlow's Virtual Core
MATLAB class to apply the logicle transformation to a matrix and provide axes labels.
An R package for the processing of plate reader and flow cytometry data. This includes: normalisation and calibration of plate reader data, and removing debris and doublets and calibration of flow cytometry data.
An Open-Source Software Package for Performing High-Throughput Batch Analysis of Flow Cytometry Data
Data processing for flow cytometry and LEGENDplex cytokine data described in "Decidual leukocytes respond to African lineage Zika virus infection with mild anti-inflammatory changes during acute infection in rhesus macaques
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