Skip to content
@seaflow-uw

SeaFlow@UW

SeaFlow@UW seeks to create reproducible analytical methods to uniformly process and curate SeaFlow data

Pinned

  1. popcycle popcycle Public

    Popcycle is an R package that offers reproducible analytical tools to analyze flow cytometry data collected by SeaFlow

    R 9 8

  2. flowmix flowmix Public

    Forked from sangwon-hyun/flowmix

    Statistical analysis of ocean flow cytometry data.

    HTML

  3. bayesian-matrix-population-model bayesian-matrix-population-model Public

    Forked from CBIOMES/bayesian-matrix-population-model

    A Bayesian approach to size-structured matrix population model to estimate daily rates of phytoplankton cell division, growth and respiration

    Jupyter Notebook

  4. fsc-poc-calibration fsc-poc-calibration Public

    Conversion from light scattering measured by SeaFlow to carbon per cell

    R 1

  5. seaflow-sfl seaflow-sfl Public

    SFL files contain metadata for each SeaFlow files recorded during the cruise. These metadata are provided by the ship's data broadcast system and are being copied to the SeaFlow instrument as is.

    HTML 2 2

  6. fsc-size-calibration fsc-size-calibration Public

    Conversion from light scattering measured by SeaFlow to cell diameter

    R 2

Repositories

Showing 10 of 14 repositories
  • popcycle Public

    Popcycle is an R package that offers reproducible analytical tools to analyze flow cytometry data collected by SeaFlow

    R 9 MIT 8 7 0 Updated May 16, 2024
  • seaflow-website Public

    seaflow data website

    TeX 0 MIT 0 0 0 Updated Mar 20, 2024
  • seaflowpy Public

    Python package with library and CLI tool for analyzing SeaFlow data

    Python 5 GPL-3.0 3 1 0 Updated Mar 1, 2024
  • seaflow-sfl Public

    SFL files contain metadata for each SeaFlow files recorded during the cruise. These metadata are provided by the ship's data broadcast system and are being copied to the SeaFlow instrument as is.

    HTML 2 MIT 2 0 1 Updated Jan 26, 2024
  • seaflow-filter Public
    R 0 MIT 1 0 0 Updated Jan 26, 2024
  • realtime-dbs Public

    SeaFlow realtime analysis parameter databases

    0 MIT 1 0 0 Updated Jan 18, 2024
  • seaflow-virtualcore Public

    Calibration of SeaFlow's Virtual Core

    R 1 MIT 0 0 0 Updated Jan 8, 2024
  • seaflog Public

    Command-line tool and Go library for parsing SeaFlow instrument v1 log files

    Go 0 MIT 0 0 0 Updated Jan 4, 2024
  • mpm-workflow Public

    SeaFlow matrix population model workflow

    Python 1 MIT 0 0 0 Updated Oct 24, 2023
  • SeaFlow_cruise_report Public

    knitR and supporting documents to build an R and LaTeX cruise report for SeaFlow data.

    TeX 1 1 0 0 Updated Oct 17, 2023
View all repositories

People

This organization has no public members. You must be a member to see who’s a part of this organization.

Top languages

Loading…

Most used topics

Loading…