FSA (Fisheries Stock Assessment) package provides R functions to conduct typical introductory fisheries analyses.
Multi-species size-based ecological modelling in R
Stochastic surplus Production model in Continuous Time
A bundle of analytics tools for fisheries scientists
This package helps fisheries scientists collect growth data from calcified structures and back-calculate estimated lengths at previous ages. The package is intended to replace much of the functionality provided by the now out-dated fishBC software.
Expanding ocean food production under climate change
Catch, Length, and Specimen Data Import Program Instructions for at sea survey data for AFSC's Gulf of Alaska and Bering Sea groundfish surveys.
Bayesian Yield-Per-Recruit Model in Stan
A package for simulating marine mammal abundance and calculating reference points.
Source code to build my dissertation using bookdown
Computer code to accompany "An Introduction to Bayesian Modeling and Inference for Fisheries Scientists
A spatial overlay tool in R for estimating EU fisheries activities inside or outside spatial restriction areas
BENTHIS WP2 Workflow revisited. Split in several parts: i) obtain a gridded swept area from interpolating bottom contacting gears tracks, and ii) obtain spatial origin of catches (landings) by dispatching landings back to interpolated VMS positions, iii) compute fuel use from VMS-derived or AIS-derived effort data and fuel use models, iv) score …
A spatially explicit individual-based food web model for a large ecosystem
Data and code used in "Transient demographic dynamics of recovering fish populations shaped by past climate variability, harvest, and management"
A Management Strategy Evaluation (MSE) framework using FLBEIA and Gadget
Estimation of spatial-temporal variability of fish biomass and production using survey data
Analysis and code to support the paper "Overfishing drives over one third of all sharks and rays toward a global extinction crisis" published in Current Biology on 6th September 2021
Fisheries Management Assessment Tool
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