An interactive web tool for quality control of DNA sequencing data
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Updated
Mar 21, 2023 - Svelte
An interactive web tool for quality control of DNA sequencing data
FAstqc DAta PArser - A minimal parser to parse FastQC output data.
A quality control tool for FASTQ files written in rust
Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline
A simple fastp-MultiQC nextflow pipeline
RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
Estimate fastq-formatted read abundace in RNA-Seq analysis with Kallisto
Qiime2 and DADA2 are one of the latest bioinformatics tools used in 16S RNA analysis. The current Qiime2 and DADA2 pipelines support End to End 16S RNA analysis, among other analyses.
Analysis pipeline for processing paired-end Illumina reads obtained after ancient mtDNA target enrichment capture.
Script to clean Illumina pair-end sequences produced with the Nextera kit. Bases below Q30, Ns, and Nextera adapters are removed. Bases can also be removed at the beginning and end of each sequence. At the end, clean files can be analyzed with FastQC.
An R package to parse and manage text output of the sequencing quality control utility (fastQC)
Map and post-process your bams for SNP calling
Python code to compute adatper content in reads, kmer content, per-base-GC content (at a specific position in a read alignment, against reference genome), per base NC content (at a specific position in a read alignment against the reference genome), per base seq quality (across aligned reads), per base sequence content, per base quality scores, …
Quality Control, Mapping and Reads Count for RNA-Seq Analysis
Count your fastq-formatted rna-seq reads with Salmon
Demultiplexing pipeline for sequencing data
Exploring Bioinformatics pipelines
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