This script allows us to generate ORF for a given Protein Sequence.
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Updated
May 2, 2017 - Python
This script allows us to generate ORF for a given Protein Sequence.
FastC aims to provide a simple way to do some quality control checks on treated sequence data. It is similar to FastQC allowing a comparative study between raw and processed data.
Warning: this tool is in early development stage, use with care.
Shuffle the string sequences such that the k-mer frequency is preserved in each string
omicR for R studio creates fasta files, downloads genomes from NCBI using the refseq number, creates databases to run BLAST+, runs BLAST+ and filters these results to obtain the best match per sequence. These scripts can be used to run BLAST alignment of short-read (DArTseq data) and long-read sequences (Illumina, PacBio… etc). You can use refer…
fxtools: light-weight processing tool for FASTA/FASTQ/BAM format data
Sequence clustering and database creation using mmseqs, from local fasta files
Team Genomics One is a group of Bioinformatics enthusiasts gathered together from around the globe , to learn and move forward in solving biological myths by analyzing various types of biological data. We believe Team Work is Dream Work!!!
Idris (Idris2) port of the Haskell biofasta library.
SeqCutter is designed to extract specific subsequences from a FASTA file based on a cluster definition.
a pacbiohifi read check for the quick view of the read types.
An R script to measure the potential influence of different parameters that could have affected the speed of pairwise sequence alignment, using the functions of the Biostrings package.
Sequence GC ratios and skew calculations
Idris (Idris2) port of the Haskell biocore library.
CULSPIN- Computing ULam SPiral INdices tool
Examples of Molecular Phylogenomics figures created from self-taught usage of MEGA-X software.
Merge a list of functional annotations with a fasta file of sequences
A short script for searching in Uniprot using RESTful APIs
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