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exact-matching

Here are 3 public repositories matching this topic...

CMU-SAFARI / GenStore

GenStore is the first in-storage processing system designed for genome sequence analysis that greatly reduces both data movement and computational overheads of genome sequence analysis by exploiting low-cost and accurate in-storage filters. Described in the ASPLOS 2022 paper by Mansouri Ghiasi et al. at https://people.inf.ethz.ch/omutlu/pub/GenS…

ftl ssd sequence-alignment read-mapping long-reads hardware-accelerator near-data-processing pre-alignment-filtering in-storage-processing exact-matching

Updated Apr 6, 2022
C

bodeolukolu / Qmatey

Quantitative metagenomic alignment and taxonomic exact-matching

bioinformatics metagenomics microbiome its-sequence shotgun-metagenomics 16s-seq exact-matching reduced-representation-sequencing strain-level-profiling compositional-correlation

Updated May 15, 2024
Shell

zeyadusf / Exact-matching-algorithms-DNA

Bioinformatics algorithms for DNA pattern searching

bioinformatics approximate-string-matching dna-sequences pyqt6 exact-matching

Updated Jan 22, 2024
Python

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