Repository for the main Dockerfile with the OpenWorm software stack and project-wide issues
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Updated
May 8, 2024 - Python
Repository for the main Dockerfile with the OpenWorm software stack and project-wide issues
WormPose: Image synthesis and convolutional networks for pose estimation in C. elegans
Ontology for phenotypes pertaining to the nematode Caenorhabditis elegans and related nematodes used by the nematode genome database WormBase
RAPToR (Real Age Prediction from Transcriptome staging on Reference) is a tool to accurately predict individual samples' developmental age from their gene expression profiles.
Research software for (semi-) automated detection and identification of neurons in images of NeuroPAL, extract ID’d neural activity traces from NeuroPAL;GCaMP animals, and upload these datasets to public repositories. DOI: 10.1016/j.cell.2020.12.012
This is a simulation for creating a worm that find it's food using two neurons.
WormRuler: A video analysis software to analyze body length of Caenorhabditis elegans
Tracking C. Elegans in a 3D environment (Computer vision)
Web-based Interfaces for Virtual C. elegans Neuron Model Definition, Network Configuration, Behavioural Experiment Definition and Experiment Results Visualisation
Bioinformatic analysis of gene expression microarray profiles and DGEs on R and R studio
An Expressive ORM for NodeJS.
Newtonian mechanics model for C. elegans locomotion
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