Official PyTorch Implementation of paper 'Edge-Based Graph Neural Networks for Cell-Graph Modeling and Prediction'

Whole Slide Image Stain Normalisation and Augmentation

Python 3 Package for optimally sampling big images with texture-aware patchification based on SLIC superpixels. So Sleek !

Self-Supervised Learning in Medicine Review

stain augmentation method based on stainmix up using multiple known stain matrices.

CLI tool to run specimen-level inference on whole slide images

Awesome List of Digital and Computational Pathology Resources

tubular structure segmentation in histopathological images

Reading list for Computational Pathology

Multimodal Context-Aware Detection of Glioma Biomarkers using MRI and WSI

The official repo of PuzzleTuning: Explicitly Bridge Pathological and Natural Image with Puzzles (arXiv: 2311.06712)

This repository contains official code for the WACV 2023 paper "HoechstGAN: Virtual Lymphocyte Staining Using Generative Adversarial Networks".

Quantitatively evaluate tumor stroma reaction within ovarian cancers, and establish assocaitaions to prognosis, molecular signatures.

DeeperHistReg - Source Code

Intel OpenVINO extension for QuPath, a digital pathology platform

Macenko normalisation of big medical slides

SpatialVisVR is a VR platform tailored for advanced visualization and analysis of medical images in immuno-oncology. It allows real-time capture and comparison of mIF and mIHC images via mobile devices. Leveraging deep learning, it matches and displays similar images, supporting up to 100 protein channels.

This repository is dedicated to the segmentation of histological features in regenerated vascular tissues obtained from tissue-engineered vascular grafts (TEVGs) implanted in sheep.

Feature extraction from GEOJson nuclei and tissue segmentation maps