Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
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Updated
May 23, 2024 - C++
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
Ultrafast de novo assembly for long noisy reads (though having no consensus step)
💾 📃 "Reads to report" for public health and clinical microbiology
Simple bacterial assembly and annotation pipeline
De novo assembly based variant calling pipeline for Illumina short reads
Standalone C library for assembling Illumina short reads in small regions
A WGS de novo assembler based on the FMD-index for large genomes
TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly
Learning to untangle genome assembly with graph neural networks.
Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.
A simple DSL2 workflow: tutorial
🌺 reference-free transcriptome assembly for short and long reads
De novo assembly pipeline for 10X linked-reads using Supernova
Iterative Organellar Genome Assembly
Germline DNM caller based on LdBG assembly of pathogens
UNDER CONSTRUCTION: Hybrid genome assembly pipeline using a combination of long and short sequencing reads
Biocore's de novo transcriptome assembly workflow based on Nextflow
De novo assembly pipeline for 10X linked-reads, used at the SciLifeLab National Genomics Infrastructure.
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