QuPath - Bioimage analysis & digital pathology
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Updated
May 24, 2024 - Java
QuPath - Bioimage analysis & digital pathology
Official code for the paper "A Good Feature Extractor Is All You Need for Weakly Supervised Pathology Slide Classification"
Tools for computational pathology
Deep learning library for digital pathology, with both Tensorflow and PyTorch support.
Computational Pathology Toolbox developed by TIA Centre, University of Warwick.
Classification of lung tumor slide images with the NCI Imaging Data Commons
Repository for "Integrative Graph-Transformer Framework for Histopathology Whole Slide Image Representation and Classification""
Towards a text-based quantitative and explainable histopathology image analysis (MICCAI 2024)
Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering
Demographic bias in misdiagnosis by computational pathology models - Nature Medicine
This repository contains code for paper: "Are you sure it’s an artifact? Artifact detection and uncertainty quantification in histological images."
Awesome List of Digital and Computational Pathology Resources
WSI classification
Histomic Prognostic Signature (HiPS): A population-level computational histologic signature for invasive breast cancer prognosis
A vision-language foundation model for computational pathology - Nature Medicine
[AAAI'23] MulGT: Multi-task Graph-Transformer with Task-aware Knowledge Injection and Domain Knowledge-driven Pooling for Whole Slide Image Analysis
[MICCAI'23] HIGT: Hierarchical Interaction Graph-Transformer for Whole Slide Image Analysis
Stain normalization tools for histological analysis and computational pathology
Towards a general-purpose foundation model for computational pathology - Nature Medicine
Personal blog on computational biology and pathology
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