General purpose tools for high-throughput catalysis
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Updated
May 14, 2024 - Python
General purpose tools for high-throughput catalysis
3d engine implementation in DNA code!
BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)
SBML differential equation and chemical reaction model (Gillespie simulations) for Julia's SciML ModelingToolkit
Finite State Projection algorithms for chemical reaction networks
Tools to generate and study moment equations for any chemical reaction network using various moment closure approximations
DelaySSAToolkit.jl: a tool in Julia for stochastic simulation with delays
This repo contains the code for the paper "Data-driven discovery of multiscale chemical reactions governed by the law of mass action"
Reaction Network Structure and Simulation Library for Resilience
Reaction Pathway Database
Network analysis from a list of molecules
genCRN: Fast enumeration of non-isomorphic chemical reaction networks
An application for simulating Chemical Reaction Networks
Performed molecular programming research at Grinnell College and Iowa State University in collaboration with 3 professors. Developed translation from CRNs to FRP, Reactamole language. Published.
Some tools for performing Monte Carlo simulations of chemical reaction networks in my research
Dedicated command-line compiler for Systems Biology
Matlab implementation of automated model reduction of biochemical reaction networks
a SageMath package to work with sign vector conditions for chemical reaction networks
Detect reactions from atomic simulation trajectory
The source for the ReactSearch project's website.
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