Some tools for performing Monte Carlo simulations of chemical reaction networks in my research
-
Updated
Jan 30, 2017 - Python
Some tools for performing Monte Carlo simulations of chemical reaction networks in my research
Dedicated command-line compiler for Systems Biology
The source for the ReactSearch project's website.
Simulates Chemical Reaction System of Partial-Log-Linear Model
Detect reactions from atomic simulation trajectory
An application for simulating Chemical Reaction Networks
genCRN: Fast enumeration of non-isomorphic chemical reaction networks
3d engine implementation in DNA code!
Matlab implementation of automated model reduction of biochemical reaction networks
Performed molecular programming research at Grinnell College and Iowa State University in collaboration with 3 professors. Developed translation from CRNs to FRP, Reactamole language. Published.
Reaction Pathway Database
This repo contains the code for the paper "Data-driven discovery of multiscale chemical reactions governed by the law of mass action"
Network analysis from a list of molecules
BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)
Reaction Network Structure and Simulation Library for Resilience
Tools to generate and study moment equations for any chemical reaction network using various moment closure approximations
DelaySSAToolkit.jl: a tool in Julia for stochastic simulation with delays
a SageMath package to work with sign vector conditions for chemical reaction networks
SBML differential equation and chemical reaction model (Gillespie simulations) for Julia's SciML ModelingToolkit
Finite State Projection algorithms for chemical reaction networks
Add a description, image, and links to the chemical-reaction-networks topic page so that developers can more easily learn about it.
To associate your repository with the chemical-reaction-networks topic, visit your repo's landing page and select "manage topics."