GO Webapp for the HIPA Tool
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Updated
Aug 3, 2020 - Go
GO Webapp for the HIPA Tool
HIPA Tool GUI
A web-based application for Cell Shape Analysis.
High Intensity Peak Analysis for detecting High Intensity Cells
Convert experiment dataset of cells into one csv format.
Deep Learning based segmentation and tracking to understand the dynamics and morphology of cells over time.
manipulation and analysis of phase microscopy data
Visualize similar cells on a 2D plot using t-SNE
Track 2D cell motion and mitosis in time-lapse microscopy
A small tool in python to read the bright-field image data and the phase image data recovered from a Digital holographic microscope (DHM) and segment the nuclei to calculate physical parameters like roughness and volume.
This remote module contains classes related to segmentation of biological cells. It has classes to represent cells' shape, color, and growth state. It also has classes to represent a cell genome, whose expression is modeled by differential equations.
Shape-Out has been superseded by Shape-Out 2.
Integrated Cell project implemented in pytorch
QuPath - Bioimage analysis & digital pathology
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