Epithelial water and solute transport along the nephron with a focus on calcium transport and regulation.
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Updated
Aug 22, 2023 - Python
Epithelial water and solute transport along the nephron with a focus on calcium transport and regulation.
Scripts for extraction and analysis of widefield calcium data from awake behaving mice.
Code to simulate local calcium dynamics in ER-PM junctions during store operated calcium entry. This MATLAB code was used to make the figures presented at FASEB Calcium and Cell Function, Lake Tahoe 2018
Scripts to create prominence plots from widefield calcium imaging data. Steinmetz et al., 2017 eneuro
Signal Processing Toolbox for Calcium Imaging Data
repository for R code from https://doi.org/10.5194/bg-18-2573-2021
CalciumImaging analysis matlab pipeline for suite2p outputs
These are tutorials I am making for using Neuro-Collection with ug4
A collection of useful methods for handling, processing, and visualizing calcium imaging data.
A Data Manipulation and Analysis Package for Calcium Indicator and Waveform Data
Code for IEEE ISBI 2018 publication.
An interactive image processing program for biologists written in Python.
A ascii/text game library
Code to simulate excitation-contraction coupling in cardiac cells using FE methods
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