Code behind 'Data Driven Modelling and Optimisation for Sustainable Bio-Production' as well as a related simple kinetic model using odes
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Updated
May 28, 2020 - Jupyter Notebook
Code behind 'Data Driven Modelling and Optimisation for Sustainable Bio-Production' as well as a related simple kinetic model using odes
Mechanistic models in fermentation
R Scripts for quantification of microbial robustness from high-throughput screenings
sbml2hyb is a tool for SBML compatible hybrid modelling of biological systems
Material for standard text book model of batch cultivation where substrate measurement noise added and end of batch detected
Performance and Robustness trade-offs in yeast - analysis of phenotypic data from 24 Saccharomyces cerevisiae strains grown in 29 conditions
Notebooks with examples to be presented at Modelica 15 in October 2023
Deep hybrid modeling of bioreactor cell culture data using Long Short-Term Memory (LSTM) networks combined with first principles equations
Python package for processing of DASware raw data exports.
The Biorefinery Simulation and Techno-Economic Analysis Modules; Life Cycle Assessment; Chemical Process Simulation Under Uncertainty
Material for standard text book model of batch cultivation. Updated.
Material for standard text book model of fedbatch cultivation. Updated.
Material for standard text book model of chemostat (continuous) cultivation. Updated.
Material for standard text book model of perfusion cultivation. Updated.
Material for standard text book model of batch cultivation where model is calibrated using time series data for substrate and cell concentration. Updated.
Material for model of aerated fedbatch cultivation of yeast. Updated.
Material for model of fedbatch cultivation of CHO cells. Updated.
Material for model of batch cultivation of yeast and exploring constraint-based view of metabolism and growth.
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