bionlp
Here are 60 public repositories matching this topic...
Corpus of Online Medical EnTities: the cometA corpus
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Apr 30, 2024 - Jupyter Notebook
A cost-sensitive BERT that handles the class imbalance for the task of biomedical NER.
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Apr 11, 2024 - Python
A full-text article retrieval pipeline for biomedical literature.
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Mar 11, 2024 - Python
GePI (GEne - Protein Interactions) is a web portal for quick and convenient access to gene - protein interaction mentions automatically extracted from the biomedical literature, i.e. PubMed and PubMed Central (Open Access Subset).
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Mar 6, 2024 - JavaScript
Binary classifier to identify scientific publications reporting pharmacokinetic parameters estimated in vivo
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Jan 21, 2024 - Python
datasets for tissue and tool named entity recognition, annotation files for biological workflow extraction, and disambiguation files
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Nov 7, 2023 - Jupyter Notebook
BioNLP Workshop 2023 and Shared Tasks @ ACL 2023
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Oct 30, 2023 - Python
Multimodal Question Answering in the Medical Domain: A summary of Existing Datasets and Systems
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Oct 17, 2023
BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences
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Aug 15, 2023 - Jupyter Notebook
[BioCreative VII] Track 5 - LitCovid track Multi-label topic classification for COVID-19 literature annotation
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Aug 13, 2023 - Python
This code is to run MetaMap in parallel using Python.
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Jul 20, 2023 - Python
MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)
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Jun 12, 2023 - Python
This repository automatically requests and extracts abstract from PubMed.
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May 28, 2023 - Python
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