bioinformatics-pipeline
Here are 625 public repositories matching this topic...
Align SARS-CoV-2 sequences against a reference genome, and trim UTR sequences
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Jun 10, 2021 - Nextflow
CutNtag pipeline for Pasini's lab written in snakemake
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Mar 28, 2023 - Python
Pipeline to make pairwise comparisons of matched fasta sequences.
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Nov 28, 2022 - Python
Whole exome sequencing snakemake workflow based on GATK best practice
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Sep 24, 2023 - Jupyter Notebook
main Repository for my Master's Thesis work
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May 21, 2023 - R
Snakemake pipeline for meta-analysis of functional screening data
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Feb 7, 2024 - Python
Grafting plays a pivotal role in modern agriculture, providing myriad benefits for both farmers and plants
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Mar 25, 2024 - R
HMMER-based microcin search using full microcin sequences and double-glycine signal region.
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May 2, 2024 - Jupyter Notebook
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Mar 26, 2019 - Python
Perform basic QC on illumina data
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May 15, 2019 - Groovy
A pipeline to estimate the rate of purifying selection acting on stop codons of ortholog clusters from OrthoDB.(Based on https://github.com/cseoighe/StopEvol)
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Aug 11, 2019 - R
Small rna pipeline. Category:Multi-Sample
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Jul 15, 2021 - WDL
Perform basic QC on illumina data
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May 15, 2019 - Groovy
Gene Polymorphisms Among Plasmodium vivax Geographical Isolates and the Potential as New Biomarkers for Gametocyte Detection
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Apr 25, 2022 - R
Analysis of variance (ANOVA) is a collection of statistical models and their associated estimation procedures (such as the "variation" among and between groups) used to analyze the differences among means.
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Mar 2, 2024 - Jupyter Notebook
END OF MASTER'S PROJECT: Valencian International University VIU
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Mar 21, 2024 - Jupyter Notebook
biopatternsg is a system that builds gene regulatory networks from a basic collection of biological objects, gathering and processing PubMed abstracts, using Internet available informational resources like Mesh, GeneOntology, UniProt, PDB and others, and that uses java and logical engines like prolog to integrate and analyse them.
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May 11, 2024
Bioinformatics-pipeline in snakemake.
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Sep 6, 2021 - R
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