A general 16S rDNA sequencing analysis pipeline

Lightweight library for parsing quality control information for the UMIs in 10x single cell gene expression assays

This is an R script to perform Principal Component Analysis (PCA) for High Resolution Melting (HRM) Data.

This repository contains examples of applications of deep learning on bioinformatics

Identifying proteins and metabolic pathways associated with the neuroprotective response mediated by tibolone in astrocytes under an induced inflammatory model.

Pathway fingerprinting for analysis of gene expression arrays

Analysis of variance (ANOVA) is a collection of statistical models and their associated estimation procedures (such as the "variation" among and between groups) used to analyze the differences among means.

Sequence Alignment tool

My solutions for the project of "An Intro to Bioinformatics" - Sharif University of Technology (SUT) - Prof. Somayyeh Koohi and Prof. Ali Sharifi-Zarchi - Fall 2021(1400-1).

Set of scripts to process RAD-Seq HTS data on computing grids like MetaCentrum.

Pipeline to prepare alignments for visualization with ACT (goo.gl/1T28jX) and for locating possible inter-chromosomal re-arrengments/misjoints

Stellenbosch University Variant Calling Pipeline

Biological Data Analysis Library

2D Gini Index Implementation

Correlation Analysis for Taxonomic Data

This repository has some basic bioinformatics activity/operations done in Python. Although, there are n number of offline and online tools doing these jobs but still, doing these jobs by own coding would give you a proper insight into how those available tools work at the coding level. Don't just copy the codes, rather try to understand the logi…

Project for the Epigenomics course of Bioinformatics for Computational Genomics MSc

Sequence Alignment tool

Some solved problems of ROSALIND

Code for the manuscript "Identifying Optimal Substrate Classes of Membrane Transporters"