ARG normalization by mapping to the ARO ontology.
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Updated
May 25, 2024 - Python
ARG normalization by mapping to the ARO ontology.
(Meta-)genome screening for functional and natural product gene sequences
AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.
This repository contains a Python-based genome assembler designed to perform k-mer spectrum-based error correction and generate SAM files for visualizing genome mappings. It supports genomic data analysis with a focus on identifying mutations relevant to antibiotic resistance.
Simulating antibiotic resistant bacteria growth
A tool for AMR gene family prediction, simple and ML-based
Antibiotic Resistant Target Seeker (ARTS)
Metabundance: Investigating ARG abundance in metagenomes and linking them to MGEs
ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Database
An intelligent interface project targeted towards educating people of different ages about when and why to use antibiotic medication.
A simple simulator that shows the easy way how an antibiogram works
Early prediction of Antimicrobial Resistance (AMR) using Machine Learning
An educational simple game in Italian/English that simulates interaction between antbiotics and bacteria.
This is an interdisciplinary team project with Life Sci, Learning Sci, Digital Sci and FIRE tracks for showing the influence of Antibiotics Resistance from Learning Planet Institute- Université Paris Cité
Screen plasmids for carbapenemase resistance genes, and classify using MOB Suite
Project that estimates the use and overuse of antibiotics in Idaho based on Medicare Part D data.
Curation of Antibiotic Resistance Genes by using crowdsourcing
This Github repository contains the files used to perform a master thesis about antibiotic resistance genes in wastewater.
PRAWNS: A fast and scalable bioinformatics tool that generates an efficient pan-genome representation of closely related whole genomes to provide a concise list of genomic features
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